|
Staden Assembly |
| Program name | Source | Description |
|---|
| gap4 |
Staden |
Performs assembly, contig joining, assembly checking, repeat searching, experiment
suggestion, read pair analysis and contig editing. |
| pregap4 |
Staden |
Prepares sequence trace data for analysis or assembly. |
| trev |
Staden |
Allows viewing and editing of ABI, ALF or SCF trace files. |
|
GCG Assembly |
| Program name | Source | Description |
|---|
| Assemble |
GCG |
Combines fragments into one sequence |
| GelAssemble |
GCG |
Multiple sequence editor for assembled contigs. |
| GelDisassemble |
GCG |
Breaks up contigs into single fragments. |
| GelEnter |
GCG |
Adds fragments to an assembly project. |
| GelMerge |
GCG |
Aligns sequence assembly fragments into contigs |
| GelStart |
GCG |
Starts a new fragment assembly project. |
| GelView |
GCG |
Displays structure of contigs in an assembly project. |
| NoOverlap |
GCG |
Identifies where a group of nucleotide sequences have no common subsequences. |
| Overlap |
GCG |
Looks for overlaps in a set of sequences. |
|
Others |
| Program name | Source | Description |
|---|
| merger |
EMBOSS |
Merge two overlapping sequences |
| trimseq |
EMBOSS |
Trim ambiguous bits off the ends of sequences |
