|
Antigenic Sites |
| Program name | Source | Description |
|---|
| antigenic |
EMBOSS |
Finds antigenic sites in proteins |
| PeptideStructure |
GCG |
Secondary structure and related predictions for a peptide sequence. |
| PlotStructure |
GCG |
Plots the measures of protein secondary structure from PeptideStructure. |
|
Helix Diagrams |
| Program name | Source | Description |
|---|
| HelicalWheel |
GCG |
Plots a peptide sequence as a helical wheel. |
| pepnet |
EMBOSS |
Protein helical net plot |
| pepwheel |
EMBOSS |
Protein helical wheel plot |
|
Hydropathy |
| Program name | Source | Description |
|---|
| grease |
FastA |
Kyte-Doolittle hydropathicity profile |
| Moment |
GCG |
Makes a contour plot of the helical hydrophobic moment of a peptide sequence. |
| octanol |
EMBOSS |
Displays protein hydropathy |
| pepinfo |
EMBOSS |
Plots simple amino acid properties in parallel |
| PepPlot |
GCG |
Plots measures of protein secondary structure and hydrophobicity |
| PeptideStructure |
GCG |
Secondary structure and related predictions for a peptide sequence. |
| pepwindow |
EMBOSS |
Displays protein hydropathy |
| pepwindowall |
EMBOSS |
Displays protein hydropathy of a set of sequences |
| PlotStructure |
GCG |
Plots the measures of protein secondary structure from PeptideStructure. |
| tgrease |
FastA |
Graphic plot of Kyte-Doolittle hydropathicity profile. |
|
Secondary Structure |
| Program name | Source | Description |
|---|
| garnier |
FastA |
Secondary structure prediction by the GOR method. |
| PepPlot |
GCG |
Plots measures of protein secondary structure and hydrophobicity |
| PeptideStructure |
GCG |
Secondary structure and related predictions for a peptide sequence. |
| PlotStructure |
GCG |
Plots the measures of protein secondary structure from PeptideStructure. |
|
Structural Motifs |
| Program name | Source | Description |
|---|
| CoilScan |
GCG |
Finds coiled coil segments in proteins |
| helixturnhelix |
EMBOSS |
Finds nucleic acid binding domains. |
| HTHScan |
GCG |
Searches for helix-turn-helix motifs. |
| pepcoil |
EMBOSS |
Predicts coiled coil regions |
| tmap |
EMBOSS |
Predict transmembrane proteins |
|
Surface Accessibility |
| Program name | Source | Description |
|---|
| pepinfo |
EMBOSS |
Plots simple amino acid properties in parallel |
| PeptideStructure |
GCG |
Secondary structure and related predictions for a peptide sequence. |
| PlotStructure |
GCG |
Plots the measures of protein secondary structure from PeptideStructure. |
