RNA Secondary Structure

 

Programs related to RNA or DNA secondary structure.

See also: The Software List Software by Group I Want To...

Program nameSourceDescription
DotPlot GCG Creates a dot plot using a file from Compare or StemLoop.
einverted EMBOSS Finds DNA inverted repeats
MFold GCG Predicts optimal secondary structure in nucleotide sequences.
palindrome EMBOSS Looks for inverted repeats in a nucleotide sequence.
Stemloop GCG Finds stems (inverted repeats) within a sequence.


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